TooT Suite: Prediction and classification of membrane transport proteins

A Genome Canada 2017 Bioinformatics and Computational Biology Competition Project

Other Datasets

Raw Data

Transportome Datasets

Raw Data

Name Original Proteins Toot-T Toot-BERT-T Overlap
A-niger-CBS513-88-proteins 14058 971 2657 892
Agaricus-bisporus-597362 11204 492 1806 425
Arabidopsis-thalian 27404 1647 4301 1311
Ashbya-gossypii-ATCC10895-cotton-pathogen 4757 349 1113 282
Bacillus-subtilis-168 4260 603 1761 520
Bos-taurus-9913 23846 1390 3939 1149
Botrytis-cinerea-1290391 11022 751 2218 673
Brassica-napus-3708 60180 2696 8657 2322
Brassica-rapa-pekinensis-51351 40801 2195 6524 1874
C-albicans-SC5314-proteins 6213 471 1448 398
Caenorhabditis-elegans-6239 19815 1074 229 68
Drosophila-melanogaster 13792 891 297 97
Ecoli-K12-proteins 4349 894 2044 730
Gallus-gallus-9031 18116 1046 3046 873
Gibberella-zeae-FGSC9075-229533 14162 948 2798 863
Homo-sapiens-9606 20541 1763 2281 733
Magnaporthe-oryzae-FGSC8958-242507 12676 709 2172 644
Medicago-truncatula 49956 1892 5980 1639
Mus-musculus-10090 21966 1226 3243 977
Oryza-sativa-japonica-39947 43655 1507 5338 1319
Penicillium-chrysogenum-ATCC28089-500485 12788 913 2607 847
Phytophthora-infestans-T30-4-403677 17609 945 2927 849
S-cerivisae-S288C-proteins 5824 701 1402 462
Sorghum-bicolor-4558 34000 1574 4407 1362
Sus-scrofa-9823 22166 1210 3290 1008
Triticum-aestivum-4565 105060 5098 14468 4461
Triticum-turgidum-4567 62645 3011 6588 2011
Ustilago-maydis-FGSC9021-cornsmut 6788 460 1411 392
Zea-mays 39395 1842 5632 1557

A_niger_CBS513_88_proteins.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

A_niger_CBS513_88_proteins.fasta

Agaricus-bisporus_597362.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Agaricus-bisporus_597362.fasta

Arabidopsis-thalian.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Arabidopsis-thalian.fasta

Ashbya-gossypii-ATCC10895-cotton-pathogen.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Ashbya-gossypii-ATCC10895-cotton-pathogen.fasta

Bacillus-subtilis-168.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Bacillus-subtilis-168.fasta

Bos-taurus_9913.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Bos-taurus_9913.fasta

Botrytis-cinerea_1290391.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Botrytis-cinerea_1290391.fasta

Brassica-napus_3708.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Brassica-napus_3708.fasta

Brassica-rapa-pekinensis_51351.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Brassica-rapa-pekinensis_51351.fasta

C_albicans_SC5314_proteins.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

C_albicans_SC5314_proteins.fasta

Caenorhabditis-elegans_6239.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Caenorhabditis-elegans_6239.fasta

Drosophila-melanogaster.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Drosophila-melanogaster.fasta

Ecoli-K12-proteins.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Ecoli-K12-proteins.fasta

Gallus-gallus_9031.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Gallus-gallus_9031.fasta

Gibberella-zeae-FGSC9075_229533.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Gibberella-zeae-FGSC9075_229533.fasta

Homo-sapiens_9606.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Homo-sapiens_9606.fasta

Magnaporthe-oryzae-FGSC8958_242507.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Magnaporthe-oryzae-FGSC8958_242507.fasta

Medicago-truncatula.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Medicago-truncatula.fasta

Mus-musculus_10090.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Mus-musculus_10090.fasta

Oryza-sativa-japonica_39947.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Oryza-sativa-japonica_39947.fasta

Penicillium-chrysogenum-ATCC28089_500485.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Penicillium-chrysogenum-ATCC28089_500485.fasta

Phytophthora-infestans-T30-4_403677.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Phytophthora-infestans-T30-4_403677.fasta

S_cerivisae_S288C_proteins.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

S_cerivisae_S288C_proteins.fasta

Sorghum-bicolor_4558.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Sorghum-bicolor_4558.fasta

Sus-scrofa_9823.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Sus-scrofa_9823.fasta

Triticum-aestivum_4565.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Triticum-aestivum_4565.fasta

Triticum-turgidum_4567.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Triticum-turgidum_4567.fasta

Ustilago-maydis-FGSC9021-cornsmut.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Ustilago-maydis-FGSC9021-cornsmut.fasta

Zea-mays.fasta

Original Fasta File

TooT-T Fasta File

TooT-BERT-T Fasta File

Zea-mays.fasta